Package: DRaWR 1.0.3
DRaWR: Discriminative Random Walk with Restart
We present DRaWR, a network-based method for ranking genes or properties related to a given gene set. Such related genes or properties are identified from among the nodes of a large, heterogeneous network of biological information. Our method involves a random walk with restarts, performed on an initial network with multiple node and edge types, preserving more of the original, specific property information than current methods that operate on homogeneous networks. In this first stage of our algorithm, we find the properties that are the most relevant to the given gene set and extract a subnetwork of the original network, comprising only the relevant properties. We then rerank genes by their similarity to the given gene set, based on a second random walk with restarts, performed on the above subnetwork.
Authors:
DRaWR_1.0.3.tar.gz
DRaWR_1.0.3.zip(r-4.5)DRaWR_1.0.3.zip(r-4.4)DRaWR_1.0.3.zip(r-4.3)
DRaWR_1.0.3.tgz(r-4.4-any)DRaWR_1.0.3.tgz(r-4.3-any)
DRaWR_1.0.3.tar.gz(r-4.5-noble)DRaWR_1.0.3.tar.gz(r-4.4-noble)
DRaWR_1.0.3.tgz(r-4.4-emscripten)DRaWR_1.0.3.tgz(r-4.3-emscripten)
DRaWR.pdf |DRaWR.html✨
DRaWR/json (API)
NEWS
# Install 'DRaWR' in R: |
install.packages('DRaWR', repos = c('https://cblatti3.r-universe.dev', 'https://cloud.r-project.org')) |
- transmat - Sample transition matrix.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 years agofrom:01afe80e04. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 13 2024 |
R-4.5-win | OK | Nov 13 2024 |
R-4.5-linux | OK | Nov 13 2024 |
R-4.4-win | OK | Nov 13 2024 |
R-4.4-mac | OK | Nov 13 2024 |
R-4.3-win | OK | Nov 13 2024 |
R-4.3-mac | OK | Nov 13 2024 |
Exports:DRaWRRWRthreeCol2listMatthreeCol2MaxMat
Dependencies:bitopscaToolsgplotsgtoolsKernSmoothlatticeMatrixROCR
Readme and manuals
Help Manual
Help page | Topics |
---|---|
DRaWR | DRaWR |
RWR | RWR |
threeCol2listMat | threeCol2listMat |
threeCol2MaxMat | threeCol2MaxMat |
Sample transition matrix. | transmat |